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Chemistry & Biochemistry

Chemistry & Biochemistry Simulators

Enzyme kinetics, chemical equilibrium, osmotic pressure, corrosion, and molecular orbital visualization — interactive tools for chemistry and biochemistry.

simulators
SIMULATORS
Acid Base Ph
Calculate pH, concentration, and pOH for acids, bases, and buffers in real time. Visualize titration curves with this interactive chemistry simulator.
Cell Division
Explore mitosis stages with interactive simulations of E. coli, yeast, cancer, and mammalian cells. Watch chromosomes condense, align, and separate.
Cell Potential
Simulate action potentials & calculate membrane potentials. Use the Nernst & Goldman-Hodgkin-Katz equations with a real-time electrophysiology simulator.
Chemical Equilibrium
Visualize chemical equilibrium, Kc, ICE tables & Le Chatelier's principle with interactive charts. Explore real-time concentration shifts and calculations.
Chemical Reaction
Simulate 1st/2nd order, reversible & consecutive chemical reaction kinetics in real-time. Automatically compute rate constants and equilibrium concentrations.
Dna Replication
Watch DNA replication in action. See helicase unwind the helix, polymerase build strands, and Okazaki fragments form in this color-coded A/T/G simulation.
Electrochemistry
Calculate electroplating, electrolysis & electrorefining instantly. Apply Faraday's Law for mass, thickness, current density & more. Fast, accurate tool.
Electrolysis
Electroplating calculator based on Faraday's law. Compute deposition mass, coating thickness, and energy consumption in real time for Cu, Ni, Cr, Zn, Au, Ag pla
Gas Laws
Interactive Gas Laws simulator — calculate and visualize engineering parameters in real time using industry-standard methods.
Molecular Dynamics
Simulate molecular dynamics with N particles using the Lennard-Jones potential. Adjust temperature to observe gas, liquid, and solid phases in real-time.
Pharmacokinetics
Simulate drug concentration-time profiles with 1- and 2-compartment models. Visualize multiple-dose accumulation, steady state, and therapeutic windows for phar
Protein Folding
Calculate protein properties instantly: net charge, hydrodynamic radius, diffusion coefficient, sedimentation, and SDS-PAGE band estimation.
Reaction Diffusion
Create Turing patterns like spots & stripes in real time with the Gray-Scott model simulator. Adjust parameters and explore the reaction-diffusion equations.
Reaction Kinetics
Plot reaction kinetics in real time. Visualize concentration decay, half-life, and the effect of activation energy using the Arrhenius equation.
Turing Patterns
Simulate Turing patterns like leopard spots & zebra stripes. Adjust feed & kill rates in the Gray-Scott model to explore self-organizing chemical reactions.
Hess Law
Interactive Hess's Law calculator: enter standard enthalpies of formation, compute reaction enthalpy ΔH°, and visualize the energy level diagram in real time. P
Molarity Dilution
Interactive molarity calculator and dilution simulator. Visualize C₁V₁=C₂V₂ dilution law with animated beakers. Perfect for high school and university chemistry
Organic Molecules
Interactively explore structures, functional groups, and properties of key organic molecules. Visualize alkanes, alcohols, carboxylic acids, esters and more in
Osmotic Pressure
Interactive simulator using van't Hoff equation π=icRT. Adjust concentration, temperature, and dissociation factor to observe U-tube water column height in real
Periodic Trends
Visualize periodic table trends interactively: atomic radius, ionization energy, electronegativity, and electron affinity as color-coded heatmaps. Click any ele
Acid-Base Titration Simulator
Interactive Acid-Base Titration Simulator simulator — calculate and visualize engineering parameters in real time using industry-standard methods.
Blood Type Genetics
Interactive Blood Type Genetics simulator — calculate and visualize engineering parameters in real time using industry-standard methods.
Nernst Equation Simulator
Interactive Nernst Equation Simulator simulator — calculate and visualize engineering parameters in real time using industry-standard methods.
Enzyme Kinetics Simulator
Interactive Enzyme Kinetics Simulator simulator — calculate and visualize engineering parameters in real time using industry-standard methods.
Osmotic Pressure Calculator
Calculate osmotic pressure using the van't Hoff equation. Visualize effects of concentration, temperature, and dissociation.
Neuron Action Potential
Simulate and animate neuron action potentials based on the Hodgkin-Huxley model. Visualize stimulus current and ion channel dynamics.
Arrhenius Reaction Rate
Calculate rate constants using the Arrhenius equation and visualize how temperature and activation energy affect reaction rates.

Other Categories

Chemistry & Biochemistry Fundamentals

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How does the Michaelis-Menten equation describe enzyme kinetics?
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v = Vmax × [S] / (Km + [S]). At low substrate concentration [S] << Km, the reaction is first-order in [S]; at saturation [S] >> Km, velocity approaches Vmax. Km is the substrate concentration at half-maximum velocity — a measure of enzyme-substrate affinity.
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What drives osmosis and how is osmotic pressure calculated?
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Osmosis is driven by the chemical potential difference across a semipermeable membrane. van't Hoff equation: π = iMRT, where i is the van't Hoff factor (2 for NaCl), M is molarity, R is gas constant, T is temperature. Seawater has π ≈ 27 atm — that's the minimum pressure needed for reverse osmosis.

Frequently Asked Questions (FAQ)

Q: What is the Henderson-Hasselbalch equation used for?

A: pH = pKa + log([A⁻]/[HA]). It calculates the pH of a buffer solution. For example, a 1:1 mixture of acetic acid (pKa = 4.76) and sodium acetate gives pH = 4.76. Buffers work best within ±1 pH unit of pKa.

Q: How does electrochemical corrosion work?

A: Galvanic corrosion occurs when two dissimilar metals contact in an electrolyte. The more active metal (anode) oxidizes: Fe → Fe²⁺ + 2e⁻. Driving voltage = EMF difference between metals (e.g., Fe vs Cu: ~0.78 V). Protection methods include cathodic protection and sacrificial anodes.

Q: What determines reaction order and rate constant?

A: Reaction order is determined experimentally from rate = k[A]^m[B]^n. The rate constant k depends on temperature via Arrhenius: k = A×exp(-Ea/RT). A 10°C temperature rise typically doubles the rate (rule of thumb: Q10 ≈ 2).

Q: How is protein folding energy calculated?

A: Free energy of folding ΔG = ΔH - TΔS. The hydrophobic effect (burial of nonpolar residues) drives folding (ΔH < 0), while conformational entropy opposes it (ΔS < 0). Most proteins fold with ΔG ≈ -5 to -15 kcal/mol — a surprisingly small margin over thermal fluctuations.